Combined burden and functional impact tests for cancer driver discovery using DriverPower
- Creator: Shuai, Shimin , Abascal, Federico , Carlevaro-Fita, Joana , Chakravarty, Dimple , Chan, Calvin Wing Yiu , Chen, Ken , Choi, Jung Kyoon , Deu-Pons, Jordi , Dhingra, Priyanka , Diamanti, Klev , Feuerbach, Lars , Fink, J. Lynn , Amin, Samirkumar B. , Scarlett, Christopher J. , Frigola, J , Gambacorti-Passerini, C , Garsed, DW , Getz, G , Guo, Q , Gut, IG , Bader, Gary D. , Bandopadhayay, Pratiti , Beroukhim, Rameen , Bertl, Johanna , Boroevich, Keith A. , Brunak, Søren , Campbell, Peter J.
- Resource Type: journal article
- Date: 2020
Inferring structural variant cancer cell fraction
- Creator: Cmero, Marek , Yuan, Ke , Cao, Shaolong , Scarlett, Christopher J. , Christie, Elizabeth L. , Cun, Yupeng , Dawson, Kevin J. , Demeulemeester, Jonas , Dentro, Stefan C. , Deshwar, Amit G. , Donmez, Nilgun , Drews, Ruben M. , Eils, Roland , Ong, Cheng Soon , Fan, Y , Fittall, MW , Garsed, DW , Gerstung, M , Getz, G , Gonzalez, S , Ha, G , Haase, K , Imielinski, M , Jerman, L , Schröder, Jan , Ji, Y , Jolly, C , Kleinheinz, K , Lee, J , Lee-Six, H , Leshchiner, I , Livitz, D , Malikic, S , Martincorena, I , Mitchell, TJ , Adams, David J. , Morris, QD , Mustonen, V , Oesper, L , Peifer, M , Peto, M , Raphael, BJ , Rosebrock, D , Rubanova, Y , Sahinalp, SC , Salcedo, A , Anur, Pavana , Schlesner, M , Schumacher, SE , Sengupta, S , Shi, R , Shin, SJ , Spellman, PT , Spiro, O , Stein, LD , Tarabichi, M , Van Loo, P , Beroukhim, Rameen , Vembu, S , Vázquez-García, I , Wang, W , Wedge, DC , Wheeler, DA , Wintersinger, JA , Yang, TP , Yao, X , Yu, K , Zhu, H , Boutros, Paul C. , Corcoran, NM , Papenfuss, T , Hovens, CM , Markowetz, F , Macintyre, G , Aaltonen, LA , Abascal, F , Abeshouse, A , Aburatani, H , Adams, DJ , Bowtell, David D. L. , Agrawal, N , Ahn, KS , Ahn, SM , Aikata, H , Akbani, R , Akdemir, KC , Al-Ahmadie, H , Al-Sedairy, ST , Al-Shahrour, F , Alawi, M , Campbell, Peter J. , Albert, M , Aldape, K , Alexandrov, LB , Ally, A , Alsop, K , Alvarez, EG , Amary, F , Amin, SB , Aminou, B , Ammerpohl, O
- Resource Type: journal article
- Date: 2020
Integrative pathway enrichment analysis of multivariate omics data
- Creator: Paczkowska, Marta , Barenboim, Jonathan , Bader, Gary D. , Beroukhim, Rameen , Bertl, Johanna , Boroevich, Keith A. , Brunak, Søren , Campbell, Peter J. , Carlevaro-Fita, Joana , Chakravarty, Dimple , Chan, Calvin Wing Yiu , Chen, Ken , Sintupisut, Nardnisa , Choi, Jung Kyoon , Scarlett, Christopher J. , Fox, Natalie S. , Zhu, Helen , Abd-Rabbo, Diala , Mee, Miles W. , Boutros, Paul C. , Abascal, Federico , Armin, Samirkumar B.
- Resource Type: journal article
- Date: 2020
Pan-cancer analysis of whole genomes
- Creator: Campbell, Peter J. , Getz, Gad , Korbel, Jan O. , Stuart, Joshua M. , Jennings, Jennifer L. , Stein, Lincoln D. , Perry, Marc D. , Nahal-Bose, Hardeep K. , Francis Ouellette, Bose B.F. , Li, Constance H. , Rheinbay, Esther , Nielsen, G. Petur , Sgroi, Dennis C. , Wu, Chin-Lee , Faquin, William C. , Deshpande, Vikram , Boutros, Paul C. , Lazar, Alexander J. , Hoadley, Katherine A. , Louis, David N. , Scarlett, Christopher J. , Dursi, L. Jonathan , Yung, CK , Bailey, MH , Saksena, G , Raine, KM , Buchhalter, I , Kleinheinz, K , Schlesner, M , Zhang, J , Wang, W , Wheeler, DA , Ding, L , Simpson, JT , O'Connor, BD , Yakneen, S , Ellrott, K , Miyoshi, N , Butler, AP , Royo, R , Shorser, SI , Vazquez, M , Rausch, T , Tiao, G , Waszak, SM , Rodriguez-Martin, B , Shringarpure, S , Wu, DY , Demidov, GM , Delaneau, O , Hayashi, S , Imoto, S , Habermann, N , Segre, AV , Garrison, E , Cafferkey, A , Alvarez, EG , Heredia-Genestar, JM , Muyas, F , Drechsel, O , Bruzos, AL , Temes, J , Zamora, J , Baez-Ortega, A , Kim, HL , Mashl, RJ , Ye, K , DiBiase, A , Huang, KL , Letunic, I , McLellan, MD , Newhouse, SJ , Shmaya, T , Kumar, S , Wedge, DC , Wright, MH , Yellapantula, VD , Gerstein, M , Khurana, E , Marques-Bonet, T , Navarro, A , Bustamante, CD , Siebert, R , Nakagawa, H , Easton, DF , Ossowski, S , Tubio, JMC , De La Vega, FM , Estivill, X , Yuen, D , Mihaiescu, GL , Omberg, L , Ferretti, V , Sabarinathan, R , Pich, O , Gonzalez-Perez, A , Taylor-Weiner, A , Fittall, MW , Demeulemeester, J , Tarabichi, M , Roberts, ND
- Resource Type: journal article
- Date: 2020
Sex differences in oncogenic mutational processes
- Creator: Li, Constance H. , Bailey, MH , Bailey, PJ , Balasundaram, M , Balu, S , Bandopadhayay, P , Prokopec, Stephenie D. , Campbell, Peter J. , Scarlett, Christopher J. , Chang, David K. , Cooke, Sussanah L. , Deshpande, Vikram , Faltas, Bishoy M. , Faquin, William C. , Garraway, Levi , Getz, Gad , Grimmond, Sean M. , Haider, Syed , Sun, Ren X. , Hoadley, KA , Jiao, W , Kaiser, VB , Karlic, R , Kato, M , Kübler, K , Lazar, AJ , Li, CH , Louis, DN , Margolin, A , Yousif, Fouad , Martin, S , Nahal-Bose, HK , Nielsen, GP , Nik-Zainal, S , Omberg, L , P¿ng, C , Perry, MD , Polak, P , Rheinbay, E , Rubin, MA , Schmitz, Nathaniel , Semple, CA , Sgroi, DC , Shibata, T , Siebert, R , Smith, J , Stein, LD , Stobbe, MD , Sun, RX , Thai, K , Wright, DW , Al-Shahrour, Fatima , Wu, CL , Yuan, K , Zhang, J , Boutros, PC , Aaltonen, LA , Abascal, F , Abeshouse, A , Aburatani, H , Adams, DJ , Agrawal, N , Atwal, Gurnit , Ahn, KS , Ahn, SM , Aikata, H , Akbani, R , Akdemir, KC , Al-Ahmadie, H , Al-Sedairy, ST , Al-Shahrour, F , Alawi, M , Albert, M , Bailey, Peter J. , Aldape, K , Alexandrov, LB , Ally, A , Alsop, K , Alvarez, EG , Amary, F , Amin, SB , Aminou, B , Ammerpohl, O , Anderson, MJ , Biankin, Andrew V. , Ang, Y , Antonello, D , Anur, P , Aparicio, S , Appelbaum, EL , Arai, Y , Aretz, A , Arihiro, K , Ariizumi, SI , Armenia, J , Boutros, Paul C. , Arnould, L , Asa, S , Assenov, Y , Atwal, G , Aukema, S , Auman, JT , Aure, MR , Awadalla, P , Aymerich, M , Bader, GD
- Resource Type: journal article
- Date: 2020