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Date: 2016
Language: eng
Resource Type: book chapter
Identifier: http://hdl.handle.net/1959.13/1349138
Description: This chapter presents an introduction of evolutionary and other nature-inspired computation. The most prominent types of evolutionary computation (EC) are genetic algorithms (GA), genetic programming ... More
Date: 2016
Language: eng
Resource Type: book chapter
Identifier: http://hdl.handle.net/1959.13/1323181
Description: This chapter addresses the issue of generating target behaviors in in vitro chemical systems that utilizes the notions of gene regulatory networks (GRN). It presents the working principle of ev... More
Date: 2016
Language: eng
Resource Type: journal article
Identifier: http://hdl.handle.net/1959.13/1321452
Description: Classification of datasets with imbalanced sample distributions has always been a challenge. In general, a popular approach for enhancing classification performance is the construction of an ensemble ... More
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Date: 2016
Language: eng
Resource Type: journal article
Identifier: http://hdl.handle.net/1959.13/1325403
Description: A robust cellular counter could enable synthetic biologists to design complex circuits with diverse behaviors. The existing synthetic-biological counters, responsive to the beginning of the pulse, are... More
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Date: 2015
Language: eng
Resource Type: journal article
Identifier: http://hdl.handle.net/1959.13/1338714
Description: In this paper, we introduce our approach for evolving reaction networks. It is an efficient derivative of the neuroevolution of augmenting topologies algorithm directed at the evolution of biochemical... More
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Date: 2015
Language: eng
Resource Type: journal article
Identifier: http://hdl.handle.net/1959.13/1334565
Description: Design and implementation of robust network modules is essential for construction of complex biological systems through hierarchical assembly of 'parts' and 'devices'. The robustness of gene regulator... More
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Date: 2015
Language: eng
Resource Type: journal article
Identifier: http://hdl.handle.net/1959.13/1340348
Description: Temperature compensation is a notable property of circadian oscillators that indicates the insensitivity of the oscillator system’s period to temperature changes; the underlying mechanism, however, is... More
Reviewed: Reviewed
Date: 2014
Language: eng
Resource Type: journal article
Identifier: http://hdl.handle.net/1959.13/1298839
Description: In this study, we propose an Interactive Evolutionary Computation system to design gene networks for synthetic biology, of which the objective is to construct new organisms through the artificial synt... More
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Date: 2013
Language: eng
Resource Type: conference paper
Identifier: http://hdl.handle.net/1959.13/1057598
Description: The unimodal Gaussian has been the distribution of choice for many extensions in Estimation of Distribution Algorithms (EDA). Some groups have used clustering algorithms, like k-means, to use multimod... More
Reviewed: Reviewed
Date: 2013
Language: eng
Resource Type: conference paper
Identifier: http://hdl.handle.net/1959.13/1057589
Description: Evolutionary algorithms (EAs) have been successfully used in many studies for evolving both the structure and parameters of biological networks including gene regulatory networks that demonstrate diff... More
Reviewed: Reviewed
Date: 2013
Language: eng
Resource Type: journal article
Identifier: http://hdl.handle.net/1959.13/1057562
Description: Proteins are composed by amino acids, which are created by genes. To understand how different genes interact to create different proteins, we need to model the gene regulatory networks (GRNs) of diffe... More
Reviewed: Reviewed
Date: 2012
Language: eng
Resource Type: conference paper
Identifier: http://hdl.handle.net/1959.13/1057596
Description: Recurrent Neural Network (RNN) is a comparatively newer modeling approach to gene regulation process. Several reverse engineering algorithms came out since its proposal and many of them are evolutiona... More
Reviewed: Reviewed
Date: 2012
Language: eng
Resource Type: conference paper
Identifier: http://hdl.handle.net/1959.13/1057592
Description: Synthetic biology has yielded many successful basic modules inspired by electronic devices over the last ten years. However, there has been very limited success in designing higher order modules by as... More
Reviewed: Reviewed
Date: 2011
Language: eng
Resource Type: conference paper
Identifier: http://hdl.handle.net/1959.13/1057559
Description: The performance of Differential Evolution (DE) algorithm is significantly affected by its parameter setting. But the choice of parameters is heavily dependent on the problem characteristics. Therefore... More
Reviewed: Reviewed
Date: 2011
Language: eng
Resource Type: conference paper
Identifier: http://hdl.handle.net/1959.13/1057544
Description: The performance of a memetic algorithm (MA) largely depends on the synergy between its global and local search counterparts. The amount of global exploration and local exploitation to be carried out, ... More
Reviewed: Reviewed